Not sure I've seen many cars with both holes going back to the inlet manifold, to get the vacuum?
I can only assume what the OP is asking untill I see a photo and clarify exactly what it is they are asking, to answer your question, 3 holes would be;
A; OEM style.
1. filler cap hole.
2. hole for PCV, hose to manifold vacuum and
3. hose from the air filter to rocker cover for fresh air thru the motor to the PCV and to vent when the system is over pressurised like at full throttle.
This system vents internally to the air filter and is a sealed system as such.
B; Race application. System vented to atmosphere.
1. oil filler hole.
2. hose to vented catch can.
3. hose to vented catch can.
One or two catch cans can be used depending on their size and location.
This system is not under vacuum from the motor and therefore is not positively vented, it relies solely on the pressure in the crank case to expire.
This system is not vented to the air filter and is not a sealed system.
c; combination of above - sealed catch can to meet ADR27 and ADR 27a applications.
1. filler cap hole.
2. hole for PCV to to the catch can (sealed, no vent to atmosphere) then to manifold vacuum and
3. hose from the air filter to rocker cover for fresh air thru the motor to the PCV and to vent when the system is over pressurised like at full throttle. A second catch can can be placed in line here but must also be sealed, ie not vented to atmosphere.